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Creators/Authors contains: "Bevers, Shaun"

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  1. Abstract Microplastics and nanoplastics (collectively, MNPs) are increasingly entering soils, with potential adverse impacts to agriculture and groundwater. Environmental detection, characterization, and quantification of MNPs is difficult and subject to artifacts, often requiring labor-intensive separation from environmental matrices. These analytical challenges make it difficult to conduct experiments investigating specific MNP characteristics influencing their transport and fate, particularly when examining multiple plastic types at low concentrations. By synthesizing a suite of metal-tagged polymers, which are cryomilled to create polydisperse fragmented particle suspensions, single particle ICP-MS (spICP-MS) can be used to quantify MNP particle size and concentration in controlled fate and transport studies. Use of unique metal-polymer pairs enables accurate, simultaneous analysis of multiple MNP types which can be used to track total particle transport and retention within a variety of environmental matrices. This was demonstrated using saturated sand column transport experiments to quantify the movement of two plastics having different properties: tin-tagged polystyrene (Sn-PS) and tantalum-tagged polyvinylpyrrolidone (Ta-PVP). The behavior of these polydisperse, fragmented MNPs was compared to that of fluorescent, carboxylated monodisperse PS spherical microspheres (Fl-PS). Mobility of all MNP types increased with decreasing particle size, and hydrophilic Ta-PVP particles migrated more effectively than the hydrophobic Sn-PS particles. Furthermore, the addition of humic acid (HA) to the carrier solution increased the colloidal stability of both metal-tagged MNP suspensions, resulting in much greater elution from the column than in HA-free deionized water or moderately- hard water (ionic strength = 5mM). This combination of particle synthesis and spICP-MS analysis provides insights into the transport of MNP having physical properties that are representative of environmental MNPs and opens up a broad range of applications for study of MNP environmental fate and transport. 
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  2. Top-down fabrication method to prepare metal-tagged nanoplastics with irregular shapes and diverse sizes for lab-based studies using spICP-MS. 
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  3. Multiple dilutions allow artifact-free analysis of regions of the particle size distribution. Power law modeling leads to larger size analysis range. 
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  4. null (Ed.)
    Abstract Adenosine-to-inosine (A-to-I) editing of eukaryotic cellular RNAs is essential for protection against auto-immune disorders. Editing is carried out by ADAR1, whose innate immune response-specific cytoplasmic isoform possesses a Z-DNA binding domain (Zα) of unknown function. Zα also binds to CpG repeats in RNA, which are a hallmark of Z-RNA formation. Unexpectedly, Zα has been predicted — and in some cases even shown — to bind to specific regions within mRNA and rRNA devoid of such repeats. Here, we use NMR, circular dichroism, and other biophysical approaches to demonstrate and characterize the binding of Zα to mRNA and rRNA fragments. Our results reveal a broad range of RNA sequences that bind to Zα and adopt Z-RNA conformations. Binding is accompanied by destabilization of neighboring A-form regions which is similar in character to what has been observed for B-Z-DNA junctions. The binding of Zα to non-CpG sequences is specific, cooperative and occurs with an affinity in the low micromolar range. This work allows us to propose a model for how Zα could influence the RNA binding specificity of ADAR1. 
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